Conservation of the abscission signaling peptide IDA during Angiosperm evolution: withstanding genome duplications and gain and loss of the receptors HAE/HSL2.
Identifieur interne : 001E34 ( Main/Exploration ); précédent : 001E33; suivant : 001E35Conservation of the abscission signaling peptide IDA during Angiosperm evolution: withstanding genome duplications and gain and loss of the receptors HAE/HSL2.
Auteurs : Ida M. St [Norvège] ; Russell J S. Orr [Norvège] ; Kim Fooyontphanich [France] ; Xu Jin [Suède] ; Jonfinn M B. Knutsen [Norvège] ; Urs Fischer [Suède] ; Timothy J. Tranbarger [France] ; Inger Nordal [Norvège] ; Reidunn B. Aalen [Norvège]Source :
- Frontiers in plant science [ 1664-462X ] ; 2015.
Abstract
The peptide INFLORESCENCE DEFICIENT IN ABSCISSION (IDA), which signals through the leucine-rich repeat receptor-like kinases HAESA (HAE) and HAESA-LIKE2 (HSL2), controls different cell separation events in Arabidopsis thaliana. We hypothesize the involvement of this signaling module in abscission processes in other plant species even though they may shed other organs than A. thaliana. As the first step toward testing this hypothesis from an evolutionarily perspective we have identified genes encoding putative orthologs of IDA and its receptors by BLAST searches of publically available protein, nucleotide and genome databases for angiosperms. Genes encoding IDA or IDA-LIKE (IDL) peptides and HSL proteins were found in all investigated species, which were selected as to represent each angiosperm order with available genomic sequences. The 12 amino acids representing the bioactive peptide in A. thaliana have virtually been unchanged throughout the evolution of the angiosperms; however, the number of IDL and HSL genes varies between different orders and species. The phylogenetic analyses suggest that IDA, HSL2, and the related HSL1 gene, were present in the species that gave rise to the angiosperms. HAE has arisen from HSL1 after a genome duplication that took place after the monocot-eudicots split. HSL1 has also independently been duplicated in the monocots, while HSL2 has been lost in gingers (Zingiberales) and grasses (Poales). IDA has been duplicated in eudicots to give rise to functionally divergent IDL peptides. We postulate that the high number of IDL homologs present in the core eudicots is a result of multiple whole genome duplications (WGD). We substantiate the involvement of IDA and HAE/HSL2 homologs in abscission by providing gene expression data of different organ separation events from various species.
DOI: 10.3389/fpls.2015.00931
PubMed: 26579174
PubMed Central: PMC4627355
Affiliations:
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St</name><affiliation wicri:level="1"><nlm:affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo</wicri:regionArea><wicri:noRegion>University of Oslo Oslo</wicri:noRegion></affiliation></author><author><name sortKey="Orr, Russell J S" sort="Orr, Russell J S" uniqKey="Orr R" first="Russell J S" last="Orr">Russell J S. Orr</name><affiliation wicri:level="1"><nlm:affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo</wicri:regionArea><wicri:noRegion>University of Oslo Oslo</wicri:noRegion></affiliation></author><author><name sortKey="Fooyontphanich, Kim" sort="Fooyontphanich, Kim" uniqKey="Fooyontphanich K" first="Kim" last="Fooyontphanich">Kim Fooyontphanich</name><affiliation wicri:level="1"><nlm:affiliation>UMR Diversité et Adaptation et Développement des Plantes, Institut de Recherche pour le Développement Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR Diversité et Adaptation et Développement des Plantes, Institut de Recherche pour le Développement Montpellier</wicri:regionArea><wicri:noRegion>Institut de Recherche pour le Développement Montpellier</wicri:noRegion><wicri:noRegion>Institut de Recherche pour le Développement Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Jin, Xu" sort="Jin, Xu" uniqKey="Jin X" first="Xu" last="Jin">Xu Jin</name><affiliation wicri:level="1"><nlm:affiliation>Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences Umeå</wicri:regionArea><wicri:noRegion>Swedish University of Agricultural Sciences Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Knutsen, Jonfinn M B" sort="Knutsen, Jonfinn M B" uniqKey="Knutsen J" first="Jonfinn M B" last="Knutsen">Jonfinn M B. Knutsen</name><affiliation wicri:level="1"><nlm:affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo</wicri:regionArea><wicri:noRegion>University of Oslo Oslo</wicri:noRegion></affiliation></author><author><name sortKey="Fischer, Urs" sort="Fischer, Urs" uniqKey="Fischer U" first="Urs" last="Fischer">Urs Fischer</name><affiliation wicri:level="1"><nlm:affiliation>Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences Umeå, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences Umeå</wicri:regionArea><wicri:noRegion>Swedish University of Agricultural Sciences Umeå</wicri:noRegion></affiliation></author><author><name sortKey="Tranbarger, Timothy J" sort="Tranbarger, Timothy J" uniqKey="Tranbarger T" first="Timothy J" last="Tranbarger">Timothy J. Tranbarger</name><affiliation wicri:level="1"><nlm:affiliation>UMR Diversité et Adaptation et Développement des Plantes, Institut de Recherche pour le Développement Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR Diversité et Adaptation et Développement des Plantes, Institut de Recherche pour le Développement Montpellier</wicri:regionArea><wicri:noRegion>Institut de Recherche pour le Développement Montpellier</wicri:noRegion><wicri:noRegion>Institut de Recherche pour le Développement Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Nordal, Inger" sort="Nordal, Inger" uniqKey="Nordal I" first="Inger" last="Nordal">Inger Nordal</name><affiliation wicri:level="1"><nlm:affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo</wicri:regionArea><wicri:noRegion>University of Oslo Oslo</wicri:noRegion></affiliation></author><author><name sortKey="Aalen, Reidunn B" sort="Aalen, Reidunn B" uniqKey="Aalen R" first="Reidunn B" last="Aalen">Reidunn B. Aalen</name><affiliation wicri:level="1"><nlm:affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</nlm:affiliation><country xml:lang="fr">Norvège</country><wicri:regionArea>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo</wicri:regionArea><wicri:noRegion>University of Oslo Oslo</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The peptide INFLORESCENCE DEFICIENT IN ABSCISSION (IDA), which signals through the leucine-rich repeat receptor-like kinases HAESA (HAE) and HAESA-LIKE2 (HSL2), controls different cell separation events in Arabidopsis thaliana. We hypothesize the involvement of this signaling module in abscission processes in other plant species even though they may shed other organs than A. thaliana. As the first step toward testing this hypothesis from an evolutionarily perspective we have identified genes encoding putative orthologs of IDA and its receptors by BLAST searches of publically available protein, nucleotide and genome databases for angiosperms. Genes encoding IDA or IDA-LIKE (IDL) peptides and HSL proteins were found in all investigated species, which were selected as to represent each angiosperm order with available genomic sequences. The 12 amino acids representing the bioactive peptide in A. thaliana have virtually been unchanged throughout the evolution of the angiosperms; however, the number of IDL and HSL genes varies between different orders and species. The phylogenetic analyses suggest that IDA, HSL2, and the related HSL1 gene, were present in the species that gave rise to the angiosperms. HAE has arisen from HSL1 after a genome duplication that took place after the monocot-eudicots split. HSL1 has also independently been duplicated in the monocots, while HSL2 has been lost in gingers (Zingiberales) and grasses (Poales). IDA has been duplicated in eudicots to give rise to functionally divergent IDL peptides. We postulate that the high number of IDL homologs present in the core eudicots is a result of multiple whole genome duplications (WGD). We substantiate the involvement of IDA and HAE/HSL2 homologs in abscission by providing gene expression data of different organ separation events from various species. </div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">26579174</PMID><DateCompleted><Year>2015</Year><Month>11</Month><Day>20</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>6</Volume><PubDate><Year>2015</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Conservation of the abscission signaling peptide IDA during Angiosperm evolution: withstanding genome duplications and gain and loss of the receptors HAE/HSL2.</ArticleTitle><Pagination><MedlinePgn>931</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2015.00931</ELocationID><Abstract><AbstractText>The peptide INFLORESCENCE DEFICIENT IN ABSCISSION (IDA), which signals through the leucine-rich repeat receptor-like kinases HAESA (HAE) and HAESA-LIKE2 (HSL2), controls different cell separation events in Arabidopsis thaliana. We hypothesize the involvement of this signaling module in abscission processes in other plant species even though they may shed other organs than A. thaliana. As the first step toward testing this hypothesis from an evolutionarily perspective we have identified genes encoding putative orthologs of IDA and its receptors by BLAST searches of publically available protein, nucleotide and genome databases for angiosperms. Genes encoding IDA or IDA-LIKE (IDL) peptides and HSL proteins were found in all investigated species, which were selected as to represent each angiosperm order with available genomic sequences. The 12 amino acids representing the bioactive peptide in A. thaliana have virtually been unchanged throughout the evolution of the angiosperms; however, the number of IDL and HSL genes varies between different orders and species. The phylogenetic analyses suggest that IDA, HSL2, and the related HSL1 gene, were present in the species that gave rise to the angiosperms. HAE has arisen from HSL1 after a genome duplication that took place after the monocot-eudicots split. HSL1 has also independently been duplicated in the monocots, while HSL2 has been lost in gingers (Zingiberales) and grasses (Poales). IDA has been duplicated in eudicots to give rise to functionally divergent IDL peptides. We postulate that the high number of IDL homologs present in the core eudicots is a result of multiple whole genome duplications (WGD). We substantiate the involvement of IDA and HAE/HSL2 homologs in abscission by providing gene expression data of different organ separation events from various species. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Stø</LastName><ForeName>Ida M</ForeName><Initials>IM</Initials><AffiliationInfo><Affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Orr</LastName><ForeName>Russell J S</ForeName><Initials>RJ</Initials><AffiliationInfo><Affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fooyontphanich</LastName><ForeName>Kim</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>UMR Diversité et Adaptation et Développement des Plantes, Institut de Recherche pour le Développement Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jin</LastName><ForeName>Xu</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Knutsen</LastName><ForeName>Jonfinn M B</ForeName><Initials>JM</Initials><AffiliationInfo><Affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fischer</LastName><ForeName>Urs</ForeName><Initials>U</Initials><AffiliationInfo><Affiliation>Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences Umeå, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tranbarger</LastName><ForeName>Timothy J</ForeName><Initials>TJ</Initials><AffiliationInfo><Affiliation>UMR Diversité et Adaptation et Développement des Plantes, Institut de Recherche pour le Développement Montpellier, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nordal</LastName><ForeName>Inger</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Aalen</LastName><ForeName>Reidunn B</ForeName><Initials>RB</Initials><AffiliationInfo><Affiliation>Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo Oslo, Norway.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>10</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">LRR-RLK</Keyword><Keyword MajorTopicYN="N">Populus</Keyword><Keyword MajorTopicYN="N">fruit abscission</Keyword><Keyword MajorTopicYN="N">genome duplication</Keyword><Keyword MajorTopicYN="N">leaf abscission</Keyword><Keyword MajorTopicYN="N">oil palm</Keyword><Keyword MajorTopicYN="N">peptide signaling</Keyword><Keyword MajorTopicYN="N">phylogeny</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>07</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>10</Month><Day>15</Day></PubMedPubDate><PubMedPubDate 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St</name></noRegion><name sortKey="Aalen, Reidunn B" sort="Aalen, Reidunn B" uniqKey="Aalen R" first="Reidunn B" last="Aalen">Reidunn B. Aalen</name><name sortKey="Knutsen, Jonfinn M B" sort="Knutsen, Jonfinn M B" uniqKey="Knutsen J" first="Jonfinn M B" last="Knutsen">Jonfinn M B. Knutsen</name><name sortKey="Nordal, Inger" sort="Nordal, Inger" uniqKey="Nordal I" first="Inger" last="Nordal">Inger Nordal</name><name sortKey="Orr, Russell J S" sort="Orr, Russell J S" uniqKey="Orr R" first="Russell J S" last="Orr">Russell J S. Orr</name></country><country name="France"><noRegion><name sortKey="Fooyontphanich, Kim" sort="Fooyontphanich, Kim" uniqKey="Fooyontphanich K" first="Kim" last="Fooyontphanich">Kim Fooyontphanich</name></noRegion><name sortKey="Tranbarger, Timothy J" sort="Tranbarger, Timothy J" uniqKey="Tranbarger T" first="Timothy J" last="Tranbarger">Timothy J. Tranbarger</name></country><country name="Suède"><noRegion><name sortKey="Jin, Xu" sort="Jin, Xu" uniqKey="Jin X" first="Xu" last="Jin">Xu Jin</name></noRegion><name sortKey="Fischer, Urs" sort="Fischer, Urs" uniqKey="Fischer U" first="Urs" last="Fischer">Urs Fischer</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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